ZEN Imaging Software – New Quick Guides & Tutorials Available

New materials for more efficient imaging with your ZEISS microscope

ZEISS ZEN Imaging Software
ZEISS ZEN Imaging Software

ZEN 2.3 imaging software for microscopy features significant upgrades for imaging with ZEISS research instruments. ZEN 2.3 includes new features and improvements for our next-generation ZEISS Axiocam microscope cameras, ZEISS LSM 800 confocal microscope, and the new ZEISS Axio Observer microscope platform, among others. Make your imaging and user training more efficient with our newest guides, video tutorials and FAQ website!

ZEISS Software Tutorial: Introduction to the ZEN 2.3 3Dxl Module

The software tutorial gives an introduction to the new 3Dxl rendering module available for ZEN (blue) 2.3, powered by arivis.

ZEISS Software Tutorial: Working with Ultrafast Deconvolution (GPU DCV) in ZEN 2.3

The software tutorial gives an overview of the advanced GPU-based deconvolution module available for ZEN (blue) 2.3.

ZEISS Software Tutorial: Introduction to Definite Focus.2 in ZEN 2.3

The software tutorial gives an introduction to the Definite Focus.2 functions “Find Surface” and “Lock Focus” in ZEN (blue) 2.3.

Quick Guide for ZEN 2.5 (blue edition) – First steps with ZEN

ZEN 2.3 Quick Guide

The new Quick Guide for ZEN 2.5 gives users an introduction into the basic functions of ZEN such as the layout of the user interface and the workspace, and provides a step-by-step tutorial for acquisition of the first image.

ZEISS FAQ Pages for Light Microscopy

Our new FAQ (Frequently Asked Questions) pages collect various materials and helpful content regarding software and hardware for light microscopy applications, including ZEN and Axiovision guides. Visit the overview here!

For more details about software, services & trainings please contact your ZEISS account manager or use our web contact form: www.zeiss.com/microscopy/contact

You can download your personal copy of the free ZEN lite image viewer at www.zeiss.com/zen-lite

Want to stay updated on our latest products, technology and applications? Subscribe to our newsletter!

Please note that your professional ZEISS confocal, widefield, superresolution or light sheet microscopy workstation is supported by us on the basis of the pre-installed system image, e.g. Windows 7 64bit with ZEN 2.0. Before performing any upgrades to the operating system or ZEN imaging software, please consult with your ZEISS account manager first.

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10 Responses to “ZEN Imaging Software – New Quick Guides & Tutorials Available”

  1. Kuei Ching Hsiung

    Hi, this is the user from UCL.
    We are using the zen 2.3 pro software. When I trying to use tiles function, the images acquired but them were displayed in the wrong order. The one should be on the bottom right, appeared on the top right. Is it due to the stage settings or the way this application merge the images?

    • ZEISS Microscopy

      Hi there – thank you for contact us! Your local product team is the best group to contact for your software question. Here is their contact information:

      Carl Zeiss Ltd
      Phone: +44 1223 401 500

      Please do not hesitate to contact us with any further questions.

    • ZEISS Microscopy

      Dear Anna,

      Thank you for your question. The best team to support you is your local ZEISS Microscopy office. Here is the contact information:

      Carl Zeiss Microscopy, LLC
      One North Broadway
      10601 White Plains
      +1 800 233 2343

      Please let us know if you have any problems getting in contact or if we can assist you further.

        • ZEISS Microscopy

          Dear Bob,

          We apologize that we cannot assist you through this platform. Service and support questions such as these are coordinated by the local team. We encourage you to reach out to them. Here is the contact information for your local office:

          Carl Zeiss BV
          Graaf Engelbertlaan 75
          4837 DS Breda
          +31(0)76 30 35 430

          • David Cameron

            Why isn’t a simple question like – Is there a user guide for Zen Blue 3.1 – deferred to a ‘local’ office / contact? This doesn’t make sense. I have spent hours trying to find an updated guide for the Image Analysis Module and the best I am getting is something from 2016, which is pre 2.6. Frustrating.


    The histogram provided by the ZEN 2.3 lite reports intensity of the fluorescence or the number of color pixels of the image?In the case of intensity, what do the values mean?

  3. Samira

    Good afternoon,
    I have a 3D z-stack file (from SIM micropscope) and I would like to make a movie from ortho view and it should play either x or y positions. I already tried export as movie but in the video, it only plays z positions. Is there an option to create a video with ortho view while playing x or y positions?

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